Overview

IDAllelesLocationGenome BuildSource
rs12368653G/Achr12: 5773947338dbsnp146
rs12368653G/A chr12: 58133256 37dbsnp146_grch37
imm_12_56419523A/G chr12: 57739473 38ImmunoChip
imm_12_56419523A/G chr12: 58133256 37ImmunoChip
imm_12_56419523A/G chr12: 56419523 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs60849538rs12368653rs12368653130

Criteria

rs12368653 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is GW-Significant in a Study 
Marker is an index SNP in a Region 

Functional Information

Gene function properties for rs12368653 as derived from dbSNP:
  • in 5prime gene region
  • in intron
Gene(s) at location of variation:  AGAP2 

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs12368653, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.