Overview

IDAllelesLocationGenome BuildSource
rs11652075C/Tchr17: 8020509438dbsnp146
rs11652075C/T chr17: 78178893 37dbsnp146_grch37
rs11652075T/C chr17: 80205094 38ImmunoChip
rs11652075T/C chr17: 78178893 37ImmunoChip
rs11652075T/C chr17: 75793488 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs59880441rs11652075rs11652075130

Criteria

rs11652075 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is GW-Significant in a Study 
Marker is an index SNP in a Region 

Functional Information

Gene function properties for rs11652075 as derived from dbSNP:
  • in 5prime gene region
  • has reference
  • has non-synonymous missense
Gene(s) at location of variation:  CARD14 

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs11652075, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.