Overview

IDAllelesLocationGenome BuildSource
rs11554159G/Achr19: 1817513438dbsnp146
rs11554159G/A chr19: 18285944 37dbsnp146_grch37
chr19_18146944A/G chr19: 18175134 38ImmunoChip
chr19_18146944A/G chr19: 18285944 37ImmunoChip
chr19_18146944A/G chr19: 18146944 36ImmunoChip

Jbrowse

Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs17852874rs11554159rs11554159126

Criteria

rs11554159 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is in r2>0.8 with an index SNP 
Marker is an index SNP in a Region 
Marker is GW-Significant in a Study 

Functional Information

Gene function properties for rs11554159 as derived from dbSNP:
  • has reference
  • has non-synonymous missense
Gene(s) at location of variation:  IFI30 

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs11554159, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.