Overview

IDAllelesLocationGenome BuildSource
rs1142287C/Tchr1: 15526034038dbsnp146
rs1142287C/T chr1: 155230131 37dbsnp146_grch37
imm_1_153496755T/C chr1: 155260340 38ImmunoChip
imm_1_153496755T/C chr1: 155230131 37ImmunoChip
imm_1_153496755T/C chr1: 153496755 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs11557756rs1142287rs1142287130
rs386580544rs1142287rs1142287142
rs3205948rs1142287rs1142287108
rs17845043rs3180018rs1142287126
rs60560269rs1142287rs1142287130
rs3180018rs1142287rs1142287130
rs17857819rs3180018rs1142287126

Criteria

rs1142287 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is an index SNP in a Region 
Marker is GW-Significant in a Study 

Functional Information

Gene function properties for rs1142287 as derived from dbSNP:
  • has synonymous
  • has reference
Gene(s) at location of variation:  SCAMP3 

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs1142287, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.