Overview

IDAllelesLocationGenome BuildSource
rs11258747G/C,Tchr10: 643092938dbsnp146
rs11258747G/C,T chr10: 6472891 37dbsnp146_grch37
imm_10_6512897A/C chr10: 6430929 38ImmunoChip
imm_10_6512897A/C chr10: 6472891 37ImmunoChip
imm_10_6512897A/C chr10: 6512897 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs60020216rs11258747rs11258747130

Criteria

rs11258747 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is an index SNP in a Region 

Functional Information

Gene function properties for rs11258747 as derived from dbSNP:
  • in intron
  • has synonymous
  • has reference
Gene(s) at location of variation:  PRKCQ 

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs11258747, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.