Overview

IDAllelesLocationGenome BuildSource
rs10781499G/Achr9: 13637195338dbsnp146
rs10781499G/A chr9: 139266405 37dbsnp146_grch37
imm_9_138386226T/C chr9: 136371953 38ImmunoChip
imm_9_138386226T/C chr9: 139266405 37ImmunoChip
imm_9_138386226T/C chr9: 138386226 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs17602851rs10781499rs10781499123

Criteria

rs10781499 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is GW-Significant in a Study 
Marker is in r2>0.8 with an index SNP 
Marker is an index SNP in a Region 

Functional Information

Gene function properties for rs10781499 as derived from dbSNP:
  • has synonymous
  • has reference
Gene(s) at location of variation:  CARD9 

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs10781499, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.