Overview

IDAllelesLocationGenome BuildSource
rs10181042C/Tchr2: 6099712438dbsnp146
rs10181042C/T chr2: 61224259 37dbsnp146_grch37
imm_2_61077763A/G chr2: 60997124 38ImmunoChip
imm_2_61077763A/G chr2: 61224259 37ImmunoChip
imm_2_61077763A/G chr2: 61077763 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs58784492rs10181042rs10181042130

Criteria

rs10181042 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is an index SNP in a Region 
Marker is GW-Significant in a Study 

Functional Information

Gene function properties for rs10181042 as derived from dbSNP:
  • in intron
Gene(s) at location of variation:  PUS10 

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs10181042, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.